Variant report

Variant	rs61359667
Chromosome Location	chr7:119652625-119652626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119649916..119652698-chr7:119653693..119655972,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10240920	1.00[EUR][1000 genomes]
rs10270493	1.00[EUR][1000 genomes]
rs10281213	1.00[ASN][1000 genomes]
rs17142462	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17142463	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727907	1.00[EUR][1000 genomes]
rs4730950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57537501	1.00[EUR][1000 genomes]
rs58094128	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59032327	1.00[EUR][1000 genomes]
rs59303341	1.00[EUR][1000 genomes]
rs59759080	1.00[EUR][1000 genomes]
rs6466720	1.00[ASN][1000 genomes]
rs6466721	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466722	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466723	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946932	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6952014	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6952303	1.00[ASN][1000 genomes]
rs6953016	1.00[ASN][1000 genomes]
rs6957543	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6958144	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6958184	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6959959	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964953	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6966039	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973663	1.00[EUR][1000 genomes]
rs6977157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977248	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980033	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213776	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431725	1.00[EUR][1000 genomes]
rs7778262	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778510	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791026	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810567	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810590	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1020070	chr7:119572954-119654387	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1034426	chr7:119584151-119655491	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1799110	chr7:119638121-119658443	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1024054	chr7:119638121-119700508	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119649200-119654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:119650600-119653400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:119652600-119654800	Weak transcription	H9 Cell Line	embryonic stem cell

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