Variant report

Variant	rs6466729
Chromosome Location	chr7:119658878-119658879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10239562	1.00[CEU][hapmap]
rs10240920	1.00[EUR][1000 genomes]
rs10270493	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10281213	1.00[ASN][1000 genomes]
rs17142462	1.00[ASN][1000 genomes]
rs17142463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727907	1.00[EUR][1000 genomes]
rs4730950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57537501	1.00[EUR][1000 genomes]
rs58094128	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59032327	1.00[EUR][1000 genomes]
rs59303341	1.00[EUR][1000 genomes]
rs59759080	1.00[EUR][1000 genomes]
rs61359667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466720	1.00[ASN][1000 genomes]
rs6466721	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946932	1.00[ASN][1000 genomes]
rs6952014	0.96[ASN][1000 genomes]
rs6952303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6953016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6957543	1.00[ASN][1000 genomes]
rs6958144	1.00[ASN][1000 genomes]
rs6958184	1.00[ASN][1000 genomes]
rs6959959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964953	1.00[ASN][1000 genomes]
rs6966039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973663	1.00[EUR][1000 genomes]
rs6977157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213776	1.00[ASN][1000 genomes]
rs73431725	1.00[EUR][1000 genomes]
rs7778262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810590	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1024054	chr7:119638121-119700508	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3391404	chr7:119656892-119659264	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv12430	chr7:119657064-119659044	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119656400-119661000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:119656400-119668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:119657400-119661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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