Variant report

Variant	rs10239562
Chromosome Location	chr7:119785784-119785785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10224732	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10270493	1.00[CEU][hapmap]
rs10273823	1.00[JPT][hapmap]
rs10279248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333483	1.00[JPT][hapmap]
rs17142550	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17142635	1.00[JPT][hapmap]
rs1990428	1.00[JPT][hapmap]
rs3735340	1.00[JPT][hapmap]
rs6952303	1.00[CEU][hapmap]
rs6953016	1.00[CEU][hapmap]
rs73431712	1.00[EUR][1000 genomes]
rs7777407	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9655835	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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