Variant report

Variant	rs17142635
Chromosome Location	chr7:119961832-119961833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239562	1.00[JPT][hapmap]
rs10246667	0.92[EUR][1000 genomes]
rs10255148	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10255222	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10263286	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10266678	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276880	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10277491	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278548	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12333483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024234	1.00[CEU][hapmap]
rs2057927	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190185	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28618094	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28637759	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7788354	0.85[YRI][hapmap]
rs9649421	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119960400-119962000	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links