Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156175	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10243027	0.80[ASN][1000 genomes]
rs10246667	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10255148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257678	0.86[AMR][1000 genomes]
rs10263286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266678	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273823	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10276880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277491	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10278548	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12333483	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17142635	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990428	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2024234	1.00[CEU][hapmap]
rs2190185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28618094	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735340	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649421	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9655835	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119897400-119901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:119897600-119901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:119898200-119903800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:119898200-119906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:119899000-119899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: