Variant report
| Variant | rs10243027 |
|---|---|
| Chromosome Location | chr7:119882193-119882194 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:119881073..119883750-chr7:119914172..119916717,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10239562 | 1.00[JPT][hapmap] |
| rs10241889 | 0.95[ASN][1000 genomes] |
| rs10255148 | 0.80[ASN][1000 genomes] |
| rs10255149 | 0.95[ASN][1000 genomes] |
| rs10255222 | 0.80[ASN][1000 genomes] |
| rs10257678 | 0.95[ASN][1000 genomes] |
| rs10263286 | 0.80[ASN][1000 genomes] |
| rs10273823 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10276880 | 0.80[ASN][1000 genomes] |
| rs12333483 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17142635 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1990428 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2057927 | 0.80[ASN][1000 genomes] |
| rs2190185 | 0.80[ASN][1000 genomes] |
| rs28441207 | 0.95[ASN][1000 genomes] |
| rs28618094 | 0.80[ASN][1000 genomes] |
| rs28637759 | 0.80[ASN][1000 genomes] |
| rs3735340 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9655835 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831113 | chr7:119683515-119886277 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv608326 | chr7:119828331-119995890 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:119881800-119882200 | Enhancers | Fetal Brain Male | brain |
