Variant report

Variant	rs1990428
Chromosome Location	chr7:119933648-119933649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239562	1.00[JPT][hapmap]
rs10246667	1.00[EUR][1000 genomes]
rs10255148	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10255222	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10263286	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10266678	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276880	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10277491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278548	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12333483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706278	1.00[JPT][hapmap]
rs17142635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024234	1.00[CEU][hapmap]
rs2057927	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190185	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28618094	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28637759	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6943092	1.00[JPT][hapmap]
rs7793864	1.00[JPT][hapmap]
rs9649421	0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119932600-119937400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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