Variant report

Variant	rs9649421
Chromosome Location	chr7:119942486-119942487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10156175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246667	1.00[EUR][1000 genomes]
rs10255148	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10255222	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10263286	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10266678	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273823	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276880	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10277491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278548	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12333483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142635	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990428	0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057927	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190185	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28618094	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28637759	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735340	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9655835	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119942400-119942600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:119942400-119942600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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