Variant report

Variant	rs3735340
Chromosome Location	chr7:119913979-119913980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156175	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10239562	1.00[JPT][hapmap]
rs10243027	0.80[ASN][1000 genomes]
rs10246667	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10255148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263286	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266678	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10276880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277491	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10278548	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12333483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17142635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2024234	1.00[CEU][hapmap]
rs2057927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190185	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28618094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649421	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9655835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119911400-119914800	Active TSS	Brain Anterior Caudate	brain
2	chr7:119911600-119914400	Active TSS	Brain Angular Gyrus	brain
3	chr7:119912000-119914000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr7:119912000-119914400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:119912000-119914600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr7:119912000-119914600	Active TSS	Fetal Brain Male	brain
7	chr7:119912000-119914600	Active TSS	GM12878-XiMat	blood
8	chr7:119912000-119914800	Active TSS	Brain Substantia Nigra	brain
9	chr7:119912200-119914000	Active TSS	Fetal Brain Female	brain
10	chr7:119912200-119914000	Bivalent/Poised TSS	Fetal Lung	lung
11	chr7:119912200-119914200	Active TSS	Fetal Kidney	kidney
12	chr7:119912200-119914400	Active TSS	Brain Hippocampus Middle	brain
13	chr7:119912200-119914600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:119912200-119914600	Active TSS	Ovary	ovary
15	chr7:119912200-119914800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:119912400-119914000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:119912400-119914000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr7:119912400-119914000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:119912400-119914000	Active TSS	Duodenum Mucosa	Duodenum
20	chr7:119912400-119914000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr7:119912400-119914000	Active TSS	Psoas Muscle	Psoas
22	chr7:119912400-119914000	Bivalent/Poised TSS	Right Ventricle	heart
23	chr7:119912400-119914000	Bivalent/Poised TSS	HSMM	muscle
24	chr7:119912400-119914000	Bivalent/Poised TSS	HSMMtube	muscle
25	chr7:119912400-119914200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:119912400-119914200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:119912400-119914200	Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:119912400-119914200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr7:119912400-119914200	Active TSS	Rectal Smooth Muscle	rectum
30	chr7:119912400-119914200	Active TSS	Right Atrium	heart
31	chr7:119912400-119914400	Active TSS	H9 Cell Line	embryonic stem cell
32	chr7:119912400-119914400	Active TSS	Colon Smooth Muscle	Colon
33	chr7:119912400-119914600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:119912400-119914600	Active TSS	Brain Cingulate Gyrus	brain
35	chr7:119912600-119914000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:119912600-119914200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr7:119912600-119914200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
38	chr7:119912600-119914200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr7:119912600-119914400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr7:119912600-119914400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:119912600-119914600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr7:119912600-119914600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr7:119912600-119915000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr7:119912800-119914000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:119912800-119914000	Active TSS	Esophagus	oesophagus
46	chr7:119912800-119914000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr7:119912800-119914000	Bivalent/Poised TSS	Fetal Stomach	stomach
48	chr7:119912800-119914000	Bivalent/Poised TSS	Thymus	Thymus
49	chr7:119912800-119914000	Active TSS	NH-A	brain
50	chr7:119912800-119914200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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