Variant report

Variant	rs10241889
Chromosome Location	chr7:119827073-119827074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10239562	1.00[JPT][hapmap]
rs10243027	0.95[ASN][1000 genomes]
rs10255149	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10257678	1.00[ASN][1000 genomes]
rs10273823	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12333483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1990428	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28441207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3735340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9655835	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119824400-119827800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119826600-119827400	Enhancers	Fetal Heart	heart
3	chr7:119826600-119830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:119827000-119828800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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