Variant report

Variant	rs10257678
Chromosome Location	chr7:119830449-119830450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10239562	1.00[JPT][hapmap]
rs10241889	1.00[ASN][1000 genomes]
rs10243027	0.95[ASN][1000 genomes]
rs10255149	1.00[ASN][1000 genomes]
rs10273823	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12333483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142635	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1990428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2057927	0.86[AMR][1000 genomes]
rs28441207	1.00[ASN][1000 genomes]
rs28637759	0.86[AMR][1000 genomes]
rs3735340	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9655835	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119827800-119830800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119828800-119831200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:119829000-119831200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:119829200-119830600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:119829200-119830800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:119829400-119831200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:119829800-119831200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:119829800-119831200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:119830000-119831000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:119830000-119831200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:119830200-119830800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:119830200-119830800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:119830200-119830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:119830200-119831000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:119830200-119831000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:119830200-119831000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:119830200-119831000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:119830200-119831200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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