Variant report

Variant	rs7777407
Chromosome Location	chr7:119809828-119809829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10224732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10270493	1.00[CEU][hapmap]
rs10273823	1.00[JPT][hapmap]
rs10279248	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12333483	1.00[JPT][hapmap]
rs17142550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142635	1.00[JPT][hapmap]
rs1990428	1.00[JPT][hapmap]
rs3735340	1.00[JPT][hapmap]
rs73431712	1.00[EUR][1000 genomes]
rs9655835	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119805200-119810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119807800-119811000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:119808600-119811400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:119808600-119812400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:119808600-119820600	Weak transcription	NHLF	lung
6	chr7:119808800-119810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:119808800-119811600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:119809800-119812000	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links