Variant report

Variant	rs17142550
Chromosome Location	chr7:119815349-119815350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10224732	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10270493	1.00[CEU][hapmap]
rs10273823	1.00[JPT][hapmap]
rs10279248	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12333483	1.00[JPT][hapmap]
rs17142635	1.00[JPT][hapmap]
rs1990428	1.00[JPT][hapmap]
rs3735340	1.00[JPT][hapmap]
rs73431712	1.00[EUR][1000 genomes]
rs7777407	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655835	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119808600-119820600	Weak transcription	NHLF	lung
2	chr7:119813800-119819400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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