Variant report

Variant	rs61379900
Chromosome Location	chr14:32267328-32267329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10137865	1.00[EUR][1000 genomes]
rs10220278	1.00[EUR][1000 genomes]
rs17098165	1.00[EUR][1000 genomes]
rs28608520	1.00[EUR][1000 genomes]
rs56928201	1.00[EUR][1000 genomes]
rs57523000	1.00[EUR][1000 genomes]
rs58188991	1.00[EUR][1000 genomes]
rs60541176	1.00[EUR][1000 genomes]
rs7147535	1.00[EUR][1000 genomes]
rs73253203	1.00[EUR][1000 genomes]
rs73255134	1.00[EUR][1000 genomes]
rs73255158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259015	1.00[EUR][1000 genomes]
rs73271245	1.00[EUR][1000 genomes]
rs8006201	1.00[EUR][1000 genomes]
rs8007116	1.00[EUR][1000 genomes]
rs8013480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv976828	chr14:32257091-32272180	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3373821	chr14:32262894-32267432	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3527907	chr14:32262966-32267373	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3527918	chr14:32262966-32267373	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32244400-32270200	Weak transcription	Ovary	ovary
3	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:32250800-32270200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr14:32251200-32272600	Weak transcription	Primary T cells from cord blood	blood
6	chr14:32252600-32268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:32257600-32272200	Weak transcription	Pancreas	Pancrea
8	chr14:32257600-32281200	Weak transcription	HepG2	liver
9	chr14:32258000-32270600	Weak transcription	Gastric	stomach
10	chr14:32261200-32268400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:32263000-32287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:32266800-32281000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:32267200-32267600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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