Variant report

Variant	rs73271245
Chromosome Location	chr14:32090220-32090221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10134975	1.00[EUR][1000 genomes]
rs10137865	1.00[EUR][1000 genomes]
rs10220278	1.00[EUR][1000 genomes]
rs17098165	1.00[EUR][1000 genomes]
rs28608520	1.00[EUR][1000 genomes]
rs56928201	1.00[EUR][1000 genomes]
rs57523000	1.00[EUR][1000 genomes]
rs58188991	1.00[EUR][1000 genomes]
rs60541176	1.00[EUR][1000 genomes]
rs61379900	1.00[EUR][1000 genomes]
rs73253203	1.00[EUR][1000 genomes]
rs73255134	1.00[EUR][1000 genomes]
rs73255158	1.00[EUR][1000 genomes]
rs73269255	1.00[EUR][1000 genomes]
rs73269266	1.00[EUR][1000 genomes]
rs73269277	1.00[EUR][1000 genomes]
rs8006201	1.00[EUR][1000 genomes]
rs8007116	1.00[EUR][1000 genomes]
rs8013480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv3363142	chr14:32083250-32120361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32067600-32090400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:32069600-32092200	Weak transcription	Right Ventricle	heart
4	chr14:32069600-32102800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:32069800-32091400	Weak transcription	Left Ventricle	heart
6	chr14:32076400-32091000	Weak transcription	A549	lung
7	chr14:32088000-32093600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:32088800-32091600	Weak transcription	Gastric	stomach
9	chr14:32089000-32090400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:32089000-32091600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:32089200-32090400	Weak transcription	HepG2	liver
12	chr14:32089200-32090600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:32089400-32093400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:32089600-32092200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr14:32089600-32092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:32089600-32092400	Strong transcription	Primary T cells from cord blood	blood
17	chr14:32089600-32092400	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr14:32089800-32090400	Strong transcription	Ovary	ovary
19	chr14:32089800-32090600	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr14:32089800-32090600	Weak transcription	Dnd41	blood
21	chr14:32089800-32090800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr14:32089800-32090800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:32089800-32090800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:32089800-32090800	Strong transcription	Colonic Mucosa	Colon
25	chr14:32089800-32090800	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr14:32089800-32090800	Strong transcription	Pancreas	Pancrea
27	chr14:32089800-32091200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:32089800-32091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:32089800-32091800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:32089800-32092000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:32089800-32092000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:32089800-32092000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
33	chr14:32089800-32092400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:32089800-32092400	ZNF genes & repeats	Fetal Stomach	stomach
35	chr14:32089800-32093000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr14:32090000-32090600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:32090000-32092000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr14:32090000-32092200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr14:32090000-32092800	ZNF genes & repeats	Lung	lung
40	chr14:32090200-32090800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
41	chr14:32090200-32091800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:32090200-32091800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links