Variant report

Variant	rs61389038
Chromosome Location	chr4:78316126-78316127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17002614	0.95[AFR][1000 genomes]
rs17002698	1.00[AMR][1000 genomes]
rs2099872	1.00[AMR][1000 genomes]
rs28715173	0.86[AFR][1000 genomes]
rs4643843	0.86[AFR][1000 genomes]
rs58763343	0.86[AFR][1000 genomes]
rs61169633	1.00[AMR][1000 genomes]
rs61199593	1.00[AMR][1000 genomes]
rs6850445	0.85[AFR][1000 genomes]
rs72859810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866482	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866487	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672906	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78312200-78316600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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