Variant report

Variant	rs61399823
Chromosome Location	chr13:39526918-39526919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10492690	0.85[ASN][1000 genomes]
rs10492692	0.85[ASN][1000 genomes]
rs13378699	0.85[ASN][1000 genomes]
rs13378704	0.85[ASN][1000 genomes]
rs17058837	0.85[ASN][1000 genomes]
rs17058855	0.85[ASN][1000 genomes]
rs17058857	0.85[ASN][1000 genomes]
rs17058858	0.85[ASN][1000 genomes]
rs34848076	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41286137	0.85[ASN][1000 genomes]
rs4281582	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4387482	0.85[ASN][1000 genomes]
rs4420397	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4436667	0.85[ASN][1000 genomes]
rs4448804	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4448805	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4468477	0.85[ASN][1000 genomes]
rs4516086	0.85[ASN][1000 genomes]
rs4519213	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4572261	0.85[ASN][1000 genomes]
rs4589419	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56086457	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56744232	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56941051	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57209445	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58028605	0.87[ASN][1000 genomes]
rs58345618	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58808949	0.82[ASN][1000 genomes]
rs58834069	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61277006	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61478760	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61945527	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61945529	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61945535	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61945537	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61945538	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61945539	0.85[ASN][1000 genomes]
rs61945540	0.85[ASN][1000 genomes]
rs61945541	0.85[ASN][1000 genomes]
rs61945549	0.85[ASN][1000 genomes]
rs61945550	0.85[ASN][1000 genomes]
rs61945551	0.85[ASN][1000 genomes]
rs6563655	0.85[ASN][1000 genomes]
rs6563656	0.85[ASN][1000 genomes]
rs6563657	0.85[ASN][1000 genomes]
rs6563658	0.85[ASN][1000 genomes]
rs66630815	0.85[ASN][1000 genomes]
rs73169426	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7316997	0.85[ASN][1000 genomes]
rs7319379	0.82[ASN][1000 genomes]
rs7321858	0.85[ASN][1000 genomes]
rs7323023	0.85[ASN][1000 genomes]
rs7324682	0.85[ASN][1000 genomes]
rs7326814	0.85[ASN][1000 genomes]
rs7329325	0.85[ASN][1000 genomes]
rs7330236	0.85[ASN][1000 genomes]
rs7331403	0.85[ASN][1000 genomes]
rs7336989	0.85[ASN][1000 genomes]
rs7337185	0.85[ASN][1000 genomes]
rs7984237	0.85[ASN][1000 genomes]
rs7984412	0.85[ASN][1000 genomes]
rs7986033	0.85[ASN][1000 genomes]
rs7990956	0.85[ASN][1000 genomes]
rs7991385	0.82[ASN][1000 genomes]
rs9603484	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9603485	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9603486	0.85[ASN][1000 genomes]
rs9603487	0.80[ASN][1000 genomes]
rs9603488	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv520639	chr13:39525264-39529226	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv976049	chr13:39526141-39537715	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39520200-39541600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:39526200-39527000	Enhancers	HMEC	breast
3	chr13:39526200-39529200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:39526600-39528000	Enhancers	NHEK	skin
5	chr13:39526600-39528200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:39526800-39527000	Enhancers	Pancreas	Pancrea
7	chr13:39526800-39527200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links