Variant report
| Variant | rs61419803 |
|---|---|
| Chromosome Location | chr6:75357637-75357638 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12527794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12528062 | 0.84[ASN][1000 genomes] |
| rs12529893 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2252269 | 0.84[ASN][1000 genomes] |
| rs2252270 | 0.82[ASN][1000 genomes] |
| rs2485077 | 0.84[ASN][1000 genomes] |
| rs2485080 | 0.84[ASN][1000 genomes] |
| rs2485081 | 0.84[ASN][1000 genomes] |
| rs2485082 | 0.84[ASN][1000 genomes] |
| rs2485084 | 0.84[ASN][1000 genomes] |
| rs2485085 | 0.84[ASN][1000 genomes] |
| rs2485086 | 0.83[ASN][1000 genomes] |
| rs2485087 | 0.84[ASN][1000 genomes] |
| rs2485089 | 0.84[ASN][1000 genomes] |
| rs2485091 | 0.84[ASN][1000 genomes] |
| rs2485092 | 0.84[ASN][1000 genomes] |
| rs2485094 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2502473 | 0.82[ASN][1000 genomes] |
| rs2502475 | 0.84[ASN][1000 genomes] |
| rs2502477 | 0.84[ASN][1000 genomes] |
| rs2502486 | 0.84[ASN][1000 genomes] |
| rs2502488 | 0.84[ASN][1000 genomes] |
| rs2502489 | 0.84[ASN][1000 genomes] |
| rs2502490 | 0.84[ASN][1000 genomes] |
| rs2502492 | 0.84[ASN][1000 genomes] |
| rs2502494 | 0.84[ASN][1000 genomes] |
| rs9343210 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv830694 | chr6:75245483-75446282 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75355600-75361000 | Weak transcription | Osteobl | bone |
| 2 | chr6:75356000-75357800 | Weak transcription | H9 Cell Line | embryonic stem cell |
