Variant report

Variant	rs12528062
Chromosome Location	chr6:75355528-75355529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1537950	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2065884	0.81[EUR][1000 genomes]
rs2152712	0.81[AMR][1000 genomes]
rs2152713	0.81[AMR][1000 genomes]
rs2243712	0.81[AMR][1000 genomes]
rs2252269	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252270	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252276	0.80[EUR][1000 genomes]
rs2485067	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2485068	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2485070	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes]
rs2485071	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs2485076	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2485077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485078	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2485079	0.97[EUR][1000 genomes]
rs2485080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485083	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485084	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485085	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485086	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485087	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485088	0.97[EUR][1000 genomes]
rs2485089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485091	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485092	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502468	0.90[ASN][1000 genomes]
rs2502470	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2502473	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2502474	0.80[EUR][1000 genomes]
rs2502475	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502477	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502482	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502484	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502485	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502487	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502489	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502491	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502493	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502494	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502503	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2502505	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2502533	0.81[AMR][1000 genomes]
rs2502537	0.81[AMR][1000 genomes]
rs61419803	0.84[ASN][1000 genomes]
rs7739226	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9360837	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75353800-75355800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75354200-75355800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:75354200-75355800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:75354200-75355800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:75354200-75356000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:75354400-75355600	Enhancers	Osteobl	bone
7	chr6:75354400-75355800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:75354600-75355600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:75354800-75355800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:75355200-75355600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:75355200-75356400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:75355400-75355800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:75355400-75356000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:75355400-75356000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:75355400-75356200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:75355400-75356800	Enhancers	Fetal Muscle Trunk	muscle

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