Variant report

Variant	rs9360837
Chromosome Location	chr6:75427451-75427452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs12527909	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528062	0.81[AMR][1000 genomes]
rs1537950	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1572468	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1572470	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1932830	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1932831	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1932832	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2152712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184822	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2243712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252269	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2252270	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2485067	0.83[AMR][1000 genomes]
rs2485077	0.81[AMR][1000 genomes]
rs2485080	0.81[AMR][1000 genomes]
rs2485081	0.81[AMR][1000 genomes]
rs2485082	0.81[AMR][1000 genomes]
rs2485089	0.81[AMR][1000 genomes]
rs2485091	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2485092	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2485096	0.80[EUR][1000 genomes]
rs2485118	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485119	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485121	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485122	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485123	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485124	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485125	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485126	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485127	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485128	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485451	0.81[AMR][1000 genomes]
rs2485453	0.81[AMR][1000 genomes]
rs2502470	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2502473	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2502475	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2502477	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2502486	0.81[AMR][1000 genomes]
rs2502488	0.81[AMR][1000 genomes]
rs2502490	0.81[AMR][1000 genomes]
rs2502492	0.81[AMR][1000 genomes]
rs2502494	0.81[AMR][1000 genomes]
rs2502503	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2502505	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2502530	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2502531	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2502532	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2502533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502539	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2502540	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4235888	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs4235889	0.82[CEU][hapmap]
rs4259220	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4280925	0.83[AMR][1000 genomes]
rs4285290	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4296858	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4327652	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4334941	0.82[ASN][1000 genomes]
rs4351215	0.82[ASN][1000 genomes]
rs4370330	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4451100	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4451101	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4467739	0.82[ASN][1000 genomes]
rs4498305	0.83[AMR][1000 genomes]
rs4502892	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4502893	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4504443	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4504444	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4562097	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4562098	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4708160	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4708162	0.83[AMR][1000 genomes]
rs62437815	0.87[AMR][1000 genomes]
rs62437859	0.83[AMR][1000 genomes]
rs6453767	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs6453769	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6910589	0.85[AMR][1000 genomes]
rs6933532	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739226	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7746816	0.85[AMR][1000 genomes]
rs7747181	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7763785	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7764171	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7767428	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7767552	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9341491	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343205	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343206	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343207	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343208	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343210	0.90[AFR][1000 genomes]
rs9343211	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343216	0.81[ASN][1000 genomes]
rs9352146	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9352147	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9352148	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9352152	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9359105	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9360838	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9360839	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9360840	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9443053	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9443054	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9443056	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75424400-75430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75426000-75432400	Weak transcription	HSMM	muscle

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