Variant report
| Variant | rs62437859 |
|---|---|
| Chromosome Location | chr6:75433759-75433760 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr6:75433670-75433769 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000264884 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs2152712 | 0.83[AMR][1000 genomes] |
| rs2152713 | 0.83[AMR][1000 genomes] |
| rs2243712 | 0.83[AMR][1000 genomes] |
| rs2485451 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2485453 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2502464 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2502533 | 0.83[AMR][1000 genomes] |
| rs2502537 | 0.83[AMR][1000 genomes] |
| rs4280925 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4498305 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4708162 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62437815 | 0.95[AMR][1000 genomes] |
| rs62438603 | 0.85[AMR][1000 genomes] |
| rs62438799 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6910589 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7746816 | 0.93[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9360837 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv830694 | chr6:75245483-75446282 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv830695 | chr6:75409656-75583115 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv603759 | chr6:75432861-75461657 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv886169 | chr6:75432861-75610722 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
