Variant report

Variant	rs61423062
Chromosome Location	chr6:33994472-33994473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33745473..33747714-chr6:33993770..33996321,2	K562	blood:
2	chr6:33988628..33991247-chr6:33993788..33996355,4	K562	blood:
3	chr6:33993984..33995698-chr6:34121679..34124505,2	MCF-7	breast:
4	chr6:33973966..33976697-chr6:33992284..33994981,2	MCF-7	breast:
5	chr6:33955225..33955804-chr6:33994302..33994872,2	MCF-7	breast:
6	chr6:33989625..33994952-chr6:33996605..33998585,4	K562	blood:
7	chr6:33989166..33991125-chr6:33992783..33995844,4	MCF-7	breast:
8	chr6:33954883..33956833-chr6:33992692..33994729,2	MCF-7	breast:
9	chr6:33954823..33956684-chr6:33993974..33995929,3	MCF-7	breast:
10	chr6:33950169..33953263-chr6:33992738..33996651,3	MCF-7	breast:
11	chr6:33755066..33757998-chr6:33992681..33995188,2	MCF-7	breast:
12	chr6:33928175..33930963-chr6:33993122..33995355,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2306926	0.83[ASN][1000 genomes]
rs2451380	0.93[EUR][1000 genomes]
rs3778043	0.83[ASN][1000 genomes]
rs3778044	0.83[ASN][1000 genomes]
rs61457033	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457754	1.00[ASN][1000 genomes]
rs6457756	1.00[ASN][1000 genomes]
rs6901878	0.83[ASN][1000 genomes]
rs6907048	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7745888	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762948	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772436	1.00[ASN][1000 genomes]
rs902196	0.90[EUR][1000 genomes]
rs902197	0.90[EUR][1000 genomes]
rs9296110	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9461941	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461942	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461943	0.92[ASN][1000 genomes]
rs9461945	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9469671	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469672	1.00[ASN][1000 genomes]
rs9469673	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469675	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469677	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469678	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469679	0.92[ASN][1000 genomes]
rs9469681	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469682	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33984000-34010200	Weak transcription	Brain Anterior Caudate	brain
2	chr6:33984400-34023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:33985200-34002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:33985800-34000400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:33986200-34009600	Weak transcription	Right Atrium	heart
6	chr6:33988000-34013600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:33991000-34003400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:33992200-33999800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:33992800-33999000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:33993000-33995000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:33993200-33994600	Enhancers	Fetal Brain Male	brain
12	chr6:33993600-33995200	Enhancers	Stomach Mucosa	stomach
13	chr6:33994200-33994600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:33994200-33994600	Enhancers	Gastric	stomach
15	chr6:33994400-33996800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:33994400-34013000	Weak transcription	H1 Cell Line	embryonic stem cell

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