Variant report

Variant	rs9469678
Chromosome Location	chr6:33984300-33984301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33965808..33968409-chr6:33983090..33985513,2	MCF-7	breast:
2	chr6:33984015..33986037-chr6:33988721..33991163,3	MCF-7	breast:
3	chr6:33981148..33985345-chr6:33985461..33987631,3	K562	blood:
4	chr6:33979565..33981653-chr6:33981849..33984387,2	MCF-7	breast:
5	chr6:33950969..33952897-chr6:33982035..33984748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221697	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs2306926	0.83[ASN][1000 genomes]
rs2451380	0.86[EUR][1000 genomes]
rs3778043	0.83[ASN][1000 genomes]
rs3778044	0.83[ASN][1000 genomes]
rs58101301	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs59998731	0.82[AFR][1000 genomes]
rs61423062	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61457033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457754	1.00[ASN][1000 genomes]
rs6457755	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6457756	1.00[ASN][1000 genomes]
rs6901878	0.83[ASN][1000 genomes]
rs73744976	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7745888	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7762948	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772436	1.00[ASN][1000 genomes]
rs902196	0.83[EUR][1000 genomes]
rs902197	0.83[EUR][1000 genomes]
rs9296110	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461939	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9461940	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9461941	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461942	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461943	0.92[ASN][1000 genomes]
rs9461944	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9461945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9461946	0.82[AFR][1000 genomes]
rs9469671	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469672	1.00[ASN][1000 genomes]
rs9469673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469677	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469679	0.92[ASN][1000 genomes]
rs9469680	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9469681	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469682	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33982400-33984400	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr6:33982600-33984400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:33983200-33984400	Enhancers	Fetal Brain Male	brain
4	chr6:33984000-33984800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33984000-33986200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:33984000-33993600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:33984000-34010200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:33984200-33986000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:33984200-33986400	Weak transcription	Fetal Brain Female	brain

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