Variant report

Variant	rs9461946
Chromosome Location	chr6:33989350-33989351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33984015..33986037-chr6:33988721..33991163,3	MCF-7	breast:
2	chr6:33989166..33991125-chr6:33992783..33995844,4	MCF-7	breast:
3	chr6:33955318..33960116-chr6:33987348..33992002,6	MCF-7	breast:
4	chr6:33988628..33991247-chr6:33993788..33996355,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2499678	0.95[EUR][1000 genomes]
rs57642626	0.85[EUR][1000 genomes]
rs58101301	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58663929	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59998731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60279188	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61457033	0.82[AFR][1000 genomes]
rs6457755	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902110	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907048	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744976	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902198	0.95[EUR][1000 genomes]
rs9461939	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461940	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461944	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461945	0.84[AFR][1000 genomes]
rs9469673	0.82[AFR][1000 genomes]
rs9469675	0.82[AFR][1000 genomes]
rs9469678	0.82[AFR][1000 genomes]
rs9469680	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33984000-33993600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33984000-34010200	Weak transcription	Brain Anterior Caudate	brain
3	chr6:33984400-34023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33985200-34002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:33985800-34000400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:33986200-34009600	Weak transcription	Right Atrium	heart
7	chr6:33987000-33989400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:33987400-33989800	Weak transcription	Fetal Brain Female	brain
9	chr6:33987600-33992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:33988000-34013600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:33988600-33991600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:33988800-33990600	Enhancers	Fetal Brain Male	brain
13	chr6:33989000-33989800	Weak transcription	Brain Germinal Matrix	brain
14	chr6:33989000-33990800	Enhancers	Gastric	stomach
15	chr6:33989200-33989400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:33989200-33989400	Bivalent/Poised TSS	K562	blood
17	chr6:33989200-33989600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:33989200-33989800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:33989200-33990000	Enhancers	Fetal Lung	lung
20	chr6:33989200-33990200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:33989200-33990400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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