Variant report

Variant	rs61433056
Chromosome Location	chr8:54760933-54760934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:54760638-54761048	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
RGS20	TF binding region
ATP6V1H	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004228	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10504158	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11985729	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384797	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1483538	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1483539	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1483540	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1483542	0.86[ASN][1000 genomes]
rs16919616	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1842982	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1842983	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1842984	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2062226	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2306584	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306585	0.96[ASN][1000 genomes]
rs3824121	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4518622	0.82[ASN][1000 genomes]
rs57546155	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57553178	0.84[EUR][1000 genomes]
rs58652215	0.94[EUR][1000 genomes]
rs60696924	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60819522	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61194604	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6994332	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997050	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6998532	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016171	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017291	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017967	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73680325	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73680341	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73680342	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73680346	0.84[EUR][1000 genomes]
rs7827611	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7831399	0.86[ASN][1000 genomes]
rs7846259	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54756600-54762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:54756600-54764200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:54756600-54766200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:54759200-54764200	Weak transcription	NHEK	skin
5	chr8:54759200-54780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:54759400-54764200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:54760800-54768000	Weak transcription	GM12878-XiMat	blood

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