Variant report

Variant	rs73680342
Chromosome Location	chr8:54787145-54787146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54785381..54788323-chr8:54789364..54792317,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1004228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504158	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11985729	0.80[ASN][1000 genomes]
rs1384797	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483538	0.93[ASN][1000 genomes]
rs1483539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483542	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16919616	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1842982	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1842983	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1842984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2062226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306584	0.94[EUR][1000 genomes]
rs4518622	0.91[ASN][1000 genomes]
rs57546155	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57553178	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58652215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60696924	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60819522	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61194604	0.82[ASN][1000 genomes]
rs61231337	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61433056	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6994332	0.82[ASN][1000 genomes]
rs6997050	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6998532	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7016171	0.82[ASN][1000 genomes]
rs7017291	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7017967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73680325	0.94[EUR][1000 genomes]
rs73680341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73680346	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7827611	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7831399	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7846259	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54778200-54787200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:54782600-54788400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:54784200-54789000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:54785200-54788000	Weak transcription	A549	lung
5	chr8:54785400-54788000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:54785400-54789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:54785600-54791400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:54787000-54787200	Bivalent Enhancer	Brain Cingulate Gyrus	brain

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