Variant report

Variant	rs61445787
Chromosome Location	chr19:38001084-38001085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37997254..37999727-chr19:37999821..38001808,2	MCF-7	breast:
2	chr19:37996541..38000346-chr19:38000524..38005136,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266916	Chromatin interaction
ENSG00000188227	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57997998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61236240	1.00[AMR][1000 genomes]
rs955476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37998400-38004800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:37998600-38001400	Weak transcription	Colonic Mucosa	Colon
3	chr19:37998600-38002400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr19:37998600-38002600	Weak transcription	Spleen	Spleen
5	chr19:37998600-38003200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:37998600-38003800	Weak transcription	Placenta	Placenta
7	chr19:37998600-38004200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr19:37998600-38004800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr19:37998600-38005200	Weak transcription	Psoas Muscle	Psoas
10	chr19:37998600-38008400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr19:37998800-38001200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr19:37998800-38002000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr19:37998800-38002000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr19:37998800-38002200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr19:37998800-38002200	Weak transcription	Aorta	Aorta
16	chr19:37998800-38002200	Weak transcription	Pancreas	Pancrea
17	chr19:37998800-38002400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr19:37998800-38002600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:37998800-38003800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr19:37998800-38006200	Weak transcription	Esophagus	oesophagus
21	chr19:37998800-38010800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:37998800-38014000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr19:37998800-38021000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:37998800-38022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr19:37999000-38001400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr19:37999000-38001800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:37999000-38001800	Weak transcription	Fetal Muscle Leg	muscle
28	chr19:37999000-38002000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr19:37999000-38002000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:37999000-38002000	Weak transcription	Colon Smooth Muscle	Colon
31	chr19:37999000-38002000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr19:37999000-38002000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:37999000-38002200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr19:37999000-38002200	Weak transcription	Fetal Intestine Small	intestine
35	chr19:37999000-38002200	Weak transcription	Lung	lung
36	chr19:37999000-38002400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr19:37999000-38003800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr19:37999000-38004000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:37999000-38004200	Weak transcription	Brain Substantia Nigra	brain
40	chr19:37999000-38006800	Weak transcription	NH-A	brain
41	chr19:37999000-38007000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:37999000-38010800	Weak transcription	Right Ventricle	heart
43	chr19:37999000-38011000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr19:37999000-38011400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr19:37999000-38013800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:37999200-38001800	Weak transcription	HMEC	breast
48	chr19:37999200-38002000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr19:37999200-38002000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:37999200-38002200	Weak transcription	Brain Angular Gyrus	brain

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