Variant report

Variant	rs61450623
Chromosome Location	chr14:65029289-65029290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65028883..65030664-chr14:65044545..65046516,2	K562	blood:
2	chr14:65026787..65029450-chr14:65030177..65032001,2	K562	blood:
3	chr14:65007240..65009229-chr14:65027926..65029711,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73269707	0.89[AFR][1000 genomes]
rs73269729	0.84[AFR][1000 genomes]
rs73269736	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65025000-65030200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:65027800-65030600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr14:65028000-65033400	Weak transcription	Psoas Muscle	Psoas
7	chr14:65028200-65030000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:65028200-65030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:65028200-65031600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:65028200-65033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:65028200-65033400	Weak transcription	A549	lung
12	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:65028400-65033400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:65028400-65033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:65028600-65029400	Enhancers	Adipose Nuclei	Adipose
16	chr14:65028600-65030000	Weak transcription	Brain Angular Gyrus	brain
17	chr14:65028800-65033400	Weak transcription	Hela-S3	cervix
18	chr14:65029200-65029400	Enhancers	Right Atrium	heart
19	chr14:65029200-65029400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr14:65029200-65029400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr14:65029200-65030200	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:65029200-65031800	Enhancers	Brain Anterior Caudate	brain
23	chr14:65029200-65032200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr14:65029200-65033200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:65029200-65033200	Enhancers	Brain Substantia Nigra	brain
26	chr14:65029200-65035800	Weak transcription	Placenta	Placenta

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