Variant report

Variant	rs61471010
Chromosome Location	chr3:24976153-24976154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17015453	1.00[EUR][1000 genomes]
rs17015478	1.00[EUR][1000 genomes]
rs17015508	1.00[EUR][1000 genomes]
rs2068900	1.00[EUR][1000 genomes]
rs4608654	1.00[EUR][1000 genomes]
rs55719797	1.00[EUR][1000 genomes]
rs55807794	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55852742	1.00[EUR][1000 genomes]
rs56016839	1.00[EUR][1000 genomes]
rs60632616	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820097	1.00[EUR][1000 genomes]
rs73820098	1.00[EUR][1000 genomes]
rs73820315	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820322	1.00[EUR][1000 genomes]
rs73820332	1.00[EUR][1000 genomes]
rs73820338	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823004	1.00[EUR][1000 genomes]
rs73823038	1.00[EUR][1000 genomes]
rs73823040	1.00[EUR][1000 genomes]
rs73823045	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823046	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1008974	chr3:24968434-24992497	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24976000-24976400	Weak transcription	Fetal Kidney	kidney
2	chr3:24976000-24976400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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