Variant report

Variant	rs73820098
Chromosome Location	chr3:24892983-24892984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17015453	1.00[EUR][1000 genomes]
rs17015478	1.00[EUR][1000 genomes]
rs17015508	1.00[EUR][1000 genomes]
rs2068900	1.00[EUR][1000 genomes]
rs4608654	1.00[EUR][1000 genomes]
rs55719797	1.00[EUR][1000 genomes]
rs55807794	1.00[EUR][1000 genomes]
rs55852742	1.00[EUR][1000 genomes]
rs56016839	1.00[EUR][1000 genomes]
rs60632616	1.00[EUR][1000 genomes]
rs61471010	1.00[EUR][1000 genomes]
rs73820096	0.82[AFR][1000 genomes]
rs73820097	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820315	1.00[EUR][1000 genomes]
rs73820322	1.00[EUR][1000 genomes]
rs73820332	1.00[EUR][1000 genomes]
rs73820338	1.00[EUR][1000 genomes]
rs73823004	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823038	1.00[EUR][1000 genomes]
rs73823040	1.00[EUR][1000 genomes]
rs73823045	1.00[EUR][1000 genomes]
rs73823046	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834643	chr3:24779627-24942886	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv3734	chr3:24861568-24906866	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1011730	chr3:24892941-24912030	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24888000-24897800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:24888000-24898000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:24892800-24897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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