Variant report

Variant	rs61474703
Chromosome Location	chr1:59355951-59355952
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59244354..59252225-chr1:59338738..59357283,49	K562	blood:
2	chr1:59341509..59344296-chr1:59355857..59358402,2	MCF-7	breast:
3	chr1:59247150..59249652-chr1:59355694..59357549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11207320	0.94[ASN][1000 genomes]
rs11207324	0.94[ASN][1000 genomes]
rs12079982	0.81[ASN][1000 genomes]
rs12239208	0.94[ASN][1000 genomes]
rs41287670	0.89[ASN][1000 genomes]
rs57136299	0.94[ASN][1000 genomes]
rs58692001	0.94[ASN][1000 genomes]
rs59816047	0.94[ASN][1000 genomes]
rs72921508	0.94[ASN][1000 genomes]
rs744171	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv829959	chr1:59340330-59503085	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59319800-59361400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:59344800-59356000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:59348000-59360800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:59351000-59360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:59351200-59359000	Weak transcription	Brain Substantia Nigra	brain
6	chr1:59351400-59359200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:59351800-59360800	Weak transcription	Fetal Heart	heart
8	chr1:59352000-59359000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:59352200-59358800	Weak transcription	Colonic Mucosa	Colon
10	chr1:59352200-59359000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:59352400-59360800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:59352800-59356200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:59352800-59358600	Weak transcription	Gastric	stomach
14	chr1:59352800-59360600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:59353200-59356000	Weak transcription	Stomach Mucosa	stomach
16	chr1:59353400-59360000	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:59353400-59360800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:59353600-59359000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:59353600-59359000	Weak transcription	Fetal Lung	lung
20	chr1:59353600-59361200	Weak transcription	Ovary	ovary
21	chr1:59353800-59358200	Weak transcription	Psoas Muscle	Psoas
22	chr1:59353800-59358600	Weak transcription	Adipose Nuclei	Adipose
23	chr1:59353800-59358600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:59353800-59358800	Weak transcription	Lung	lung
25	chr1:59353800-59358800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:59353800-59358800	Weak transcription	Spleen	Spleen
27	chr1:59353800-59359000	Weak transcription	Left Ventricle	heart
28	chr1:59353800-59359400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:59354400-59357600	Enhancers	Fetal Intestine Large	intestine
30	chr1:59354400-59357800	Enhancers	Fetal Intestine Small	intestine
31	chr1:59354600-59356000	Enhancers	K562	blood
32	chr1:59354600-59356200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:59354600-59359000	Weak transcription	Right Atrium	heart
34	chr1:59354800-59356000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr1:59354800-59357200	Weak transcription	NHLF	lung
36	chr1:59354800-59360800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:59355000-59358400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr1:59355000-59359000	Weak transcription	HSMM	muscle
39	chr1:59355000-59359000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr1:59355000-59360000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:59355000-59360800	Weak transcription	HSMMtube	muscle
42	chr1:59355200-59358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:59355200-59359000	Weak transcription	Pancreas	Pancrea
44	chr1:59355200-59360800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:59355600-59356200	Enhancers	Small Intestine	intestine
46	chr1:59355600-59356800	Enhancers	Duodenum Mucosa	Duodenum
47	chr1:59355600-59356800	Enhancers	HepG2	liver
48	chr1:59355600-59358200	Weak transcription	HUVEC	blood vessel
49	chr1:59355800-59356200	Enhancers	Esophagus	oesophagus
50	chr1:59355800-59356200	Enhancers	Rectal Mucosa Donor 31	rectum

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