Variant report

Variant	rs61486200
Chromosome Location	chr3:54176631-54176632
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11130398	0.83[EUR][1000 genomes]
rs11914927	0.83[EUR][1000 genomes]
rs11926147	0.84[EUR][1000 genomes]
rs12635465	0.83[EUR][1000 genomes]
rs17802213	0.82[EUR][1000 genomes]
rs28613537	0.83[EUR][1000 genomes]
rs55901264	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56349750	0.83[EUR][1000 genomes]
rs59072955	0.83[EUR][1000 genomes]
rs73085924	0.80[EUR][1000 genomes]
rs73085925	0.80[EUR][1000 genomes]
rs7613759	0.94[AFR][1000 genomes]
rs7633430	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9311526	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54159800-54180400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:54160000-54180200	Weak transcription	Hela-S3	cervix
3	chr3:54170800-54176800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:54170800-54180200	Weak transcription	Right Atrium	heart
5	chr3:54174000-54180400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:54174800-54180200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:54176200-54177000	Strong transcription	Ovary	ovary
8	chr3:54176600-54177000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links