Variant report

Variant	rs7613759
Chromosome Location	chr3:54174521-54174522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11130398	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713312	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11914927	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11917010	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11926147	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635465	0.85[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17802213	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2067581	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs28613537	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56349750	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59072955	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61486200	0.94[AFR][1000 genomes]
rs6794229	0.84[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes]
rs725993	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73085924	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73085925	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73085931	0.89[AMR][1000 genomes]
rs7633430	0.95[CEU][hapmap]
rs9879718	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54158200-54176200	Weak transcription	Ovary	ovary
2	chr3:54159800-54180400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:54160000-54180200	Weak transcription	Hela-S3	cervix
4	chr3:54170800-54176800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:54170800-54180200	Weak transcription	Right Atrium	heart
6	chr3:54171200-54174600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:54171200-54176600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:54172800-54174600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:54173000-54174800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:54173800-54174600	Enhancers	Psoas Muscle	Psoas
11	chr3:54174000-54180400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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