Variant report
Variant | rs9879718 |
---|---|
Chromosome Location | chr3:54215562-54215563 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11130398 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes] |
rs11713312 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs11914927 | 0.88[ASN][1000 genomes] |
rs11917010 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes] |
rs11926147 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12635465 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes] |
rs12637828 | 0.84[JPT][hapmap] |
rs17802213 | 0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
rs2067581 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes] |
rs28458274 | 0.93[ASN][1000 genomes] |
rs28613537 | 0.88[ASN][1000 genomes] |
rs4485754 | 0.84[JPT][hapmap] |
rs56349750 | 0.84[ASN][1000 genomes] |
rs59072955 | 0.88[ASN][1000 genomes] |
rs6794229 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes] |
rs6803038 | 0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs725993 | 0.95[CHB][hapmap] |
rs73085924 | 0.88[ASN][1000 genomes] |
rs73085925 | 0.87[ASN][1000 genomes] |
rs73085931 | 0.99[ASN][1000 genomes] |
rs73085965 | 0.91[ASN][1000 genomes] |
rs7613759 | 0.92[CHB][hapmap] |
rs9809064 | 0.84[CEU][hapmap];0.94[EUR][1000 genomes] |
rs9859850 | 0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003621 | chr3:53448934-54425322 | Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
2 | nsv1006990 | chr3:53849510-54285212 | Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
3 | nsv1014595 | chr3:53944473-54846754 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv1014157 | chr3:54168755-54332321 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv518483 | chr3:54212182-54259801 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:54214800-54218800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
2 | chr3:54215200-54216400 | Weak transcription | Psoas Muscle | Psoas |