Variant report

Variant	rs6803038
Chromosome Location	chr3:54205027-54205028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11719463	0.91[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11719497	0.91[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1530734	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4077945	0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4928000	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928005	0.91[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6764560	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6797113	0.90[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7653627	0.91[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs9809064	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9809321	0.91[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9846298	0.81[ASN][1000 genomes]
rs9859850	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879718	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9883488	0.91[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54200400-54205400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:54200400-54214800	Weak transcription	Psoas Muscle	Psoas
3	chr3:54202800-54205200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:54203800-54206000	Weak transcription	Lung	lung
5	chr3:54204600-54206400	Enhancers	Hela-S3	cervix
6	chr3:54204800-54205800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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