Variant report

Variant	rs61491150
Chromosome Location	chr1:152898726-152898727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:152841998..152842773-chr1:152898298..152899254,2	K562	blood:
2	chr1:152890396..152891373-chr1:152898442..152899195,2	MCF-7	breast:
3	chr1:152898333..152898906-chr1:153005465..153006016,2	MCF-7	breast:
4	chr1:152850203..152851501-chr1:152898249..152899240,5	MCF-7	breast:
5	chr1:152469581..152470426-chr1:152898262..152898945,2	MCF-7	breast:
6	chr1:152842013..152842592-chr1:152898314..152898993,2	MCF-7	breast:
7	chr1:152843341..152844548-chr1:152897786..152899223,16	MCF-7	breast:
8	chr1:152843390..152844417-chr1:152898307..152899295,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163206	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10494280	1.00[EUR][1000 genomes]
rs10494288	1.00[EUR][1000 genomes]
rs10888519	0.99[ASN][1000 genomes]
rs10888521	1.00[EUR][1000 genomes]
rs11205126	1.00[EUR][1000 genomes]
rs11205130	1.00[EUR][1000 genomes]
rs11205147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11205183	1.00[EUR][1000 genomes]
rs11806470	1.00[EUR][1000 genomes]
rs12021601	1.00[EUR][1000 genomes]
rs12022870	1.00[EUR][1000 genomes]
rs12023643	1.00[EUR][1000 genomes]
rs12024694	1.00[EUR][1000 genomes]
rs12027303	0.99[ASN][1000 genomes]
rs12029192	1.00[EUR][1000 genomes]
rs12032522	1.00[EUR][1000 genomes]
rs12036697	1.00[EUR][1000 genomes]
rs12037754	1.00[EUR][1000 genomes]
rs12047099	1.00[EUR][1000 genomes]
rs12047225	1.00[EUR][1000 genomes]
rs12047630	1.00[EUR][1000 genomes]
rs12047888	1.00[EUR][1000 genomes]
rs12239812	1.00[EUR][1000 genomes]
rs1415973	1.00[EUR][1000 genomes]
rs16834746	1.00[EUR][1000 genomes]
rs16834838	1.00[EUR][1000 genomes]
rs16834871	1.00[EUR][1000 genomes]
rs1846857	1.00[EUR][1000 genomes]
rs1974141	1.00[EUR][1000 genomes]
rs1995307	1.00[EUR][1000 genomes]
rs2339383	1.00[EUR][1000 genomes]
rs2339501	1.00[EUR][1000 genomes]
rs28647391	1.00[EUR][1000 genomes]
rs36090881	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737862	1.00[EUR][1000 genomes]
rs3856020	1.00[EUR][1000 genomes]
rs4041337	1.00[EUR][1000 genomes]
rs4240863	1.00[EUR][1000 genomes]
rs4240864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845328	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845498	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58021079	1.00[EUR][1000 genomes]
rs58290373	1.00[EUR][1000 genomes]
rs59837747	1.00[EUR][1000 genomes]
rs60500053	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61482767	1.00[EUR][1000 genomes]
rs6668295	1.00[EUR][1000 genomes]
rs72480203	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv998873	chr1:152869127-152975258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152896800-152905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152897000-152901200	Weak transcription	HMEC	breast
3	chr1:152897000-152903000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:152898400-152898800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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