Variant report

Variant	rs61495795
Chromosome Location	chr1:161153479-161153480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161151959..161155347-chr1:161155408..161158666,4	K562	blood:
2	chr1:161146815..161149235-chr1:161150923..161155171,4	MCF-7	breast:
3	chr1:161152355..161156919-chr1:161160220..161163172,6	K562	blood:
4	chr1:161152801..161154377-chr1:161155366..161157317,2	MCF-7	breast:
5	chr1:161152375..161154264-chr1:161174776..161176578,2	K562	blood:

Variant related genes	Relation type
ENSG00000158850	Chromatin interaction
ENSG00000158864	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11583589	1.00[ASN][1000 genomes]
rs2301288	1.00[ASN][1000 genomes]
rs3813621	1.00[ASN][1000 genomes]
rs41270043	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161147800-161154200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:161147800-161155000	Weak transcription	Left Ventricle	heart
3	chr1:161147800-161155000	Weak transcription	Thymus	Thymus
4	chr1:161147800-161155600	Weak transcription	Lung	lung
5	chr1:161147800-161155600	Weak transcription	Right Atrium	heart
6	chr1:161147800-161155800	Weak transcription	Colonic Mucosa	Colon
7	chr1:161147800-161156800	Weak transcription	Small Intestine	intestine
8	chr1:161147800-161160600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:161147800-161167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:161148000-161155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:161148200-161153600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:161148200-161153800	Weak transcription	Brain Anterior Caudate	brain
13	chr1:161148200-161153800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:161148200-161154000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr1:161148200-161154000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:161148200-161154200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:161148200-161154400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:161148200-161155000	Weak transcription	Fetal Stomach	stomach
19	chr1:161148200-161155200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:161148200-161155400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:161148200-161155800	Weak transcription	Fetal Intestine Small	intestine
22	chr1:161148200-161160400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:161148200-161160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:161148200-161161000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:161148200-161162400	Weak transcription	Liver	Liver
26	chr1:161148200-161162600	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:161148200-161167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:161148400-161153800	Weak transcription	Brain Substantia Nigra	brain
29	chr1:161148400-161155000	Weak transcription	Dnd41	blood
30	chr1:161148400-161155400	Weak transcription	Stomach Mucosa	stomach
31	chr1:161148400-161161200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:161148400-161165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:161150000-161154000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:161150400-161154400	Enhancers	Primary B cells from peripheral blood	blood
35	chr1:161150600-161153800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:161150600-161155600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:161150600-161158400	Enhancers	Primary hematopoietic stem cells	blood
38	chr1:161150600-161159400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr1:161150600-161162000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr1:161151000-161153800	Enhancers	Primary B cells from cord blood	blood
41	chr1:161151400-161154000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:161151800-161154600	Flanking Active TSS	GM12878-XiMat	blood
43	chr1:161151800-161155400	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr1:161151800-161157600	Enhancers	Duodenum Mucosa	Duodenum
45	chr1:161152000-161158600	Enhancers	Fetal Thymus	thymus
46	chr1:161152200-161153800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:161152200-161155000	Weak transcription	Esophagus	oesophagus
48	chr1:161152200-161155600	Weak transcription	Spleen	Spleen
49	chr1:161152400-161155000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:161152600-161153800	Enhancers	Primary T helper cells fromperipheralblood	blood

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