Variant report

Variant	rs11583589
Chromosome Location	chr1:161159158-161159159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161157327..161160707-chr1:161160939..161164830,4	K562	blood:
2	chr1:161139949..161143125-chr1:161156905..161159223,3	K562	blood:
3	chr1:161149973..161152329-chr1:161158385..161160979,2	MCF-7	breast:
4	chr1:161136515..161138219-chr1:161157715..161160572,2	K562	blood:
5	chr1:161154836..161159906-chr1:161168588..161174016,8	K562	blood:

Variant related genes	Relation type
ENSG00000158859	Chromatin interaction
ENSG00000143224	Chromatin interaction
ENSG00000158864	Chromatin interaction
ENSG00000158850	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11576415	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12077004	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2301288	1.00[ASN][1000 genomes]
rs3402	0.83[AFR][1000 genomes]
rs34448954	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3813621	1.00[ASN][1000 genomes]
rs41270043	1.00[ASN][1000 genomes]
rs61495795	1.00[ASN][1000 genomes]
rs72714913	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161147800-161160600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:161147800-161167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:161148200-161160400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:161148200-161160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:161148200-161161000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:161148200-161162400	Weak transcription	Liver	Liver
7	chr1:161148200-161162600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:161148200-161167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:161148400-161161200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:161148400-161165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:161150600-161159400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:161150600-161162000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:161153200-161160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:161153200-161166000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:161153200-161167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:161153800-161159400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:161154000-161160800	Weak transcription	Ovary	ovary
18	chr1:161154000-161161000	Weak transcription	Gastric	stomach
19	chr1:161154400-161159600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:161154600-161159600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:161154800-161159800	Enhancers	Primary B cells from peripheral blood	blood
22	chr1:161155200-161160400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:161155400-161161000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:161155600-161159800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:161155600-161160800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:161155800-161159600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr1:161155800-161159600	Weak transcription	Fetal Stomach	stomach
28	chr1:161155800-161159800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr1:161155800-161160400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:161155800-161160400	Weak transcription	NHLF	lung
31	chr1:161156000-161159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:161156000-161161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:161156000-161162400	Weak transcription	Brain Germinal Matrix	brain
34	chr1:161156000-161167600	Weak transcription	Fetal Heart	heart
35	chr1:161156200-161159200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr1:161156200-161159400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr1:161156200-161159600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr1:161156200-161159600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr1:161156200-161159800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:161156200-161160600	Weak transcription	Fetal Intestine Small	intestine
41	chr1:161156200-161163000	Weak transcription	Thymus	Thymus
42	chr1:161156200-161163200	Weak transcription	NHDF-Ad	bronchial
43	chr1:161156200-161166200	Weak transcription	Fetal Lung	lung
44	chr1:161156400-161160400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:161156400-161160400	Weak transcription	Right Ventricle	heart
46	chr1:161156400-161161200	Weak transcription	HSMMtube	muscle
47	chr1:161156400-161161400	Weak transcription	HSMM	muscle
48	chr1:161156400-161163600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr1:161156400-161166000	Weak transcription	Esophagus	oesophagus
50	chr1:161156600-161160800	Weak transcription	Lung	lung

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