Variant report

Variant	rs72714913
Chromosome Location	chr1:161117902-161117903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11576415	0.83[AFR][1000 genomes]
rs11583589	0.83[AFR][1000 genomes]
rs11590967	0.83[AFR][1000 genomes]
rs3402	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161103800-161123000	Weak transcription	Aorta	Aorta
2	chr1:161103800-161123400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:161104000-161123000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:161104400-161122800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:161104600-161123400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:161105200-161123000	Weak transcription	A549	lung
7	chr1:161107800-161123600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:161108000-161122800	Weak transcription	Fetal Thymus	thymus
9	chr1:161117800-161118000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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