Variant report

Variant	rs61502858
Chromosome Location	chr6:85838825-85838826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs58104511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58523143	1.00[AMR][1000 genomes]
rs60352764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60492136	1.00[AMR][1000 genomes]
rs6908734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478393	1.00[AMR][1000 genomes]
rs73478396	1.00[AMR][1000 genomes]
rs73478401	1.00[AMR][1000 genomes]
rs73480208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482302	1.00[AMR][1000 genomes]
rs73486242	1.00[AMR][1000 genomes]
rs73492352	1.00[AMR][1000 genomes]
rs7744732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85837600-85840400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:85837600-85845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:85837800-85839600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:85838000-85840800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:85838400-85839600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:85838400-85839800	Enhancers	NHDF-Ad	bronchial
7	chr6:85838800-85842600	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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