Variant report
| Variant | rs7744732 |
|---|---|
| Chromosome Location | chr6:85877208-85877209 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:85871743..85874419-chr6:85874787..85877545,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NT5E-6 | chr6:85876897-85877250 | NONHSAT113832 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs58104511 | 1.00[AMR][1000 genomes] |
| rs58523143 | 1.00[AMR][1000 genomes] |
| rs60352764 | 1.00[AMR][1000 genomes] |
| rs60492136 | 1.00[AMR][1000 genomes] |
| rs61502858 | 1.00[AMR][1000 genomes] |
| rs6908734 | 1.00[AMR][1000 genomes] |
| rs73478367 | 1.00[AMR][1000 genomes] |
| rs73478378 | 1.00[AMR][1000 genomes] |
| rs73478383 | 1.00[AMR][1000 genomes] |
| rs73478385 | 1.00[AMR][1000 genomes] |
| rs73478393 | 1.00[AMR][1000 genomes] |
| rs73478396 | 1.00[AMR][1000 genomes] |
| rs73478401 | 1.00[AMR][1000 genomes] |
| rs73480208 | 1.00[AMR][1000 genomes] |
| rs73480215 | 1.00[AMR][1000 genomes] |
| rs73482302 | 1.00[AMR][1000 genomes] |
| rs73486242 | 1.00[AMR][1000 genomes] |
| rs73492352 | 1.00[AMR][1000 genomes] |
| rs73494337 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017418 | chr6:85344786-86259540 | Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv538347 | chr6:85344786-86259540 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
