Variant report

Variant	rs61506120
Chromosome Location	chr7:15957204-15957205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1072964	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1072965	0.84[ASN][1000 genomes]
rs17169144	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17169151	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59125965	0.84[ASN][1000 genomes]
rs800699	0.82[EUR][1000 genomes]
rs800717	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15955400-15957600	Enhancers	Colon Smooth Muscle	Colon
2	chr7:15955400-15957600	Enhancers	Rectal Smooth Muscle	rectum
3	chr7:15956000-15957600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:15956000-15958000	Enhancers	Fetal Stomach	stomach
5	chr7:15956000-15961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:15956200-15957400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:15956800-15957800	Enhancers	Fetal Lung	lung
8	chr7:15956800-15961000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:15957000-15957600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:15957000-15961000	Weak transcription	NHLF	lung
11	chr7:15957200-15957400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:15957200-15957600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:15957200-15957800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:15957200-15958000	Enhancers	NHDF-Ad	bronchial
15	chr7:15957200-15958000	Enhancers	Osteobl	bone
16	chr7:15957200-15960800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:15957200-15960800	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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