Variant report

Variant	rs1072965
Chromosome Location	chr7:15964754-15964755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10228138	0.87[AFR][1000 genomes]
rs10244390	0.87[EUR][1000 genomes]
rs1072964	0.89[ASN][1000 genomes]
rs17169151	0.84[ASN][1000 genomes]
rs2215168	0.82[EUR][1000 genomes]
rs2389572	0.86[EUR][1000 genomes]
rs59125965	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61506120	0.84[ASN][1000 genomes]
rs6944544	0.80[AFR][1000 genomes]
rs6962565	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6968544	0.85[EUR][1000 genomes]
rs73060296	0.84[EUR][1000 genomes]
rs73062188	0.87[EUR][1000 genomes]
rs7793631	0.83[EUR][1000 genomes]
rs7794657	0.81[AFR][1000 genomes]
rs800717	0.89[ASN][1000 genomes]
rs9654940	0.84[EUR][1000 genomes]
rs9654941	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv520205	chr7:15964238-15975614	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1072965	PRPS1L1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15964600-15964800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links