Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10244390	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262767	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486787	1.00[ASN][1000 genomes]
rs1072965	0.86[EUR][1000 genomes]
rs12155069	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1406098	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17457220	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1942643	0.86[ASN][1000 genomes]
rs2052028	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2215168	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28441374	0.84[EUR][1000 genomes]
rs36076917	1.00[ASN][1000 genomes]
rs59125965	0.85[EUR][1000 genomes]
rs6966591	1.00[ASN][1000 genomes]
rs6968544	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060245	0.86[ASN][1000 genomes]
rs73060294	0.87[ASN][1000 genomes]
rs73060296	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062182	1.00[ASN][1000 genomes]
rs73062188	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793631	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798899	1.00[ASN][1000 genomes]
rs7799669	1.00[ASN][1000 genomes]
rs9654940	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654941	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690090	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15992400-16010800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: