Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10244390	1.00[ASN][1000 genomes]
rs10262767	0.87[ASN][1000 genomes]
rs10486787	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155069	0.87[ASN][1000 genomes]
rs1406098	0.87[ASN][1000 genomes]
rs17457220	0.87[ASN][1000 genomes]
rs1942643	0.86[ASN][1000 genomes]
rs2052028	0.87[ASN][1000 genomes]
rs2215168	1.00[ASN][1000 genomes]
rs2389572	1.00[ASN][1000 genomes]
rs36076917	1.00[ASN][1000 genomes]
rs6966591	1.00[ASN][1000 genomes]
rs6968544	1.00[ASN][1000 genomes]
rs73060245	0.86[ASN][1000 genomes]
rs73060294	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73060296	1.00[ASN][1000 genomes]
rs73062182	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062188	1.00[ASN][1000 genomes]
rs7793631	1.00[ASN][1000 genomes]
rs7798899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654940	1.00[ASN][1000 genomes]
rs9654941	1.00[ASN][1000 genomes]
rs9690090	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15973600-15979600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:15973800-15977800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:15974000-15977400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:15975600-15978200	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:15976800-15977400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:15976800-15978200	Enhancers	Colon Smooth Muscle	Colon

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