Variant report

Variant	rs1942643
Chromosome Location	chr7:15926554-15926555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10244390	0.86[ASN][1000 genomes]
rs10486787	0.86[ASN][1000 genomes]
rs17428455	0.83[ASN][1000 genomes]
rs1942658	0.83[ASN][1000 genomes]
rs2215168	0.86[ASN][1000 genomes]
rs2389572	0.86[ASN][1000 genomes]
rs36076917	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6959214	0.83[ASN][1000 genomes]
rs6966591	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6968544	0.86[ASN][1000 genomes]
rs73060245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060296	0.86[ASN][1000 genomes]
rs73062182	0.86[ASN][1000 genomes]
rs73062188	0.86[ASN][1000 genomes]
rs7793631	0.86[ASN][1000 genomes]
rs7798899	0.86[ASN][1000 genomes]
rs7799669	0.86[ASN][1000 genomes]
rs9654940	0.86[ASN][1000 genomes]
rs9654941	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15924000-15929200	Weak transcription	Psoas Muscle	Psoas
2	chr7:15926000-15927800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:15926200-15926600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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