Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15955267..15957693-chr7:15974761..15976318,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10244390	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262767	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486787	1.00[ASN][1000 genomes]
rs1072965	0.85[EUR][1000 genomes]
rs12155069	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1406098	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17457220	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1942643	0.86[ASN][1000 genomes]
rs2052028	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2215168	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389572	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28441374	0.81[EUR][1000 genomes]
rs36076917	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59125965	0.84[EUR][1000 genomes]
rs6966591	1.00[ASN][1000 genomes]
rs73060245	0.86[ASN][1000 genomes]
rs73060294	0.87[ASN][1000 genomes]
rs73060296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062182	1.00[ASN][1000 genomes]
rs73062188	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793631	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798899	1.00[ASN][1000 genomes]
rs7799669	1.00[ASN][1000 genomes]
rs9654940	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654941	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690090	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15954600-15956200	Enhancers	NHDF-Ad	bronchial
2	chr7:15955000-15956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:15955000-15956200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:15955400-15956000	Enhancers	Fetal Lung	lung
5	chr7:15955400-15956400	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:15955400-15956400	Enhancers	Osteobl	bone
7	chr7:15955400-15956600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:15955400-15956600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:15955400-15957600	Enhancers	Colon Smooth Muscle	Colon
10	chr7:15955400-15957600	Enhancers	Rectal Smooth Muscle	rectum
11	chr7:15955600-15956000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:15955600-15956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:15955600-15956400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:15955600-15957000	Enhancers	Duodenum Smooth Muscle	Duodenum

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