Variant report

Variant	rs61514976
Chromosome Location	chr11:46368104-46368105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:46367382-46369131	NB4	blood:	n/a	n/a
2	POLR2A	chr11:46367645-46369105	HL-60	blood:	n/a	n/a
3	MTA3	chr11:46368001-46368854	GM12878	blood:	n/a	n/a
4	MAZ	chr11:46367786-46370048	IMR90	lung:	n/a	n/a
5	MXI1	chr11:46367959-46369982	IMR90	lung:	n/a	n/a
6	MAX	chr11:46366451-46368261	NB4	blood:	n/a	chr11:46366897-46366907
7	HCFC1	chr11:46368071-46370215	Hela-S3	cervix:	n/a	n/a
8	RELA	chr11:46367936-46369041	GM18951	blood:	n/a	n/a
9	MXI1	chr11:46367989-46370258	SK-N-SH	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46257250..46262210-chr11:46367431..46371476,7	K562	blood:
2	chr11:46367411..46370383-chr11:46395468..46399934,4	K562	blood:
3	chr11:46315131..46316685-chr11:46368074..46370322,2	MCF-7	breast:
4	chr11:46329128..46331454-chr11:46367037..46368744,2	K562	blood:
5	chr11:46257890..46267047-chr11:46362753..46375455,17	K562	blood:
6	chr11:46364302..46366934-chr11:46366940..46368898,2	K562	blood:
7	chr11:46366347..46371334-chr11:46384499..46389085,13	MCF-7	breast:

No data

Variant related genes	Relation type
DGKZ	TF binding region
ENSG00000149091	Chromatin interaction
ENSG00000264102	Chromatin interaction
ENSG00000157613	Chromatin interaction
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10734546	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489190	1.00[AMR][1000 genomes]
rs1812657	1.00[AMR][1000 genomes]
rs1873129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2029378	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2046766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2046767	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2087360	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2087361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2864071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34217002	1.00[AMR][1000 genomes]
rs34444424	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35267642	1.00[AMR][1000 genomes]
rs35715394	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35935319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4367921	1.00[AMR][1000 genomes]
rs4376875	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4433539	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4508179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4550197	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56991558	1.00[AMR][1000 genomes]
rs58314136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770070	1.00[AMR][1000 genomes]
rs60162610	1.00[AMR][1000 genomes]
rs61451984	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61693609	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485681	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464080	1.00[AMR][1000 genomes]
rs73466031	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466088	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466094	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467917	1.00[AMR][1000 genomes]
rs73467919	1.00[AMR][1000 genomes]
rs73467920	1.00[AMR][1000 genomes]
rs73467936	1.00[AMR][1000 genomes]
rs73467938	1.00[AMR][1000 genomes]
rs73467941	1.00[AMR][1000 genomes]
rs73467944	1.00[AMR][1000 genomes]
rs73467950	1.00[AMR][1000 genomes]
rs73467963	1.00[AMR][1000 genomes]
rs7924695	1.00[AMR][1000 genomes]
rs7928869	1.00[AMR][1000 genomes]
rs967754	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv897317	chr11:46363411-46417815	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46362000-46368600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:46363200-46368600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:46364000-46368200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:46364000-46369000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:46364200-46368200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:46365400-46368600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:46365600-46368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:46365600-46368200	Weak transcription	Fetal Lung	lung
9	chr11:46365600-46368400	Weak transcription	A549	lung
10	chr11:46365600-46368600	Weak transcription	Ovary	ovary
11	chr11:46366200-46369200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:46366400-46368200	Active TSS	Brain Anterior Caudate	brain
13	chr11:46366400-46368400	Active TSS	Right Atrium	heart
14	chr11:46366400-46368400	Active TSS	Right Ventricle	heart
15	chr11:46366400-46368600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr11:46366400-46368600	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr11:46366400-46368600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:46366400-46368800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr11:46366400-46368800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr11:46366400-46368800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr11:46366400-46368800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr11:46366400-46368800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr11:46366400-46368800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:46366400-46368800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:46366400-46368800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:46366400-46368800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr11:46366400-46368800	Flanking Active TSS	HMEC	breast
28	chr11:46366400-46368800	Flanking Active TSS	NHEK	skin
29	chr11:46366400-46369600	Active TSS	Rectal Smooth Muscle	rectum
30	chr11:46366600-46368200	Active TSS	Stomach Smooth Muscle	stomach
31	chr11:46366600-46368600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr11:46366600-46368800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr11:46366600-46368800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr11:46366600-46368800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr11:46366600-46368800	Flanking Active TSS	Placenta	Placenta
36	chr11:46366600-46368800	Flanking Active TSS	Fetal Thymus	thymus
37	chr11:46366600-46368800	Flanking Active TSS	GM12878-XiMat	blood
38	chr11:46366600-46368800	Flanking Active TSS	HUVEC	blood vessel
39	chr11:46366600-46369600	Active TSS	Psoas Muscle	Psoas
40	chr11:46366800-46368200	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr11:46366800-46368400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:46366800-46368400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:46366800-46368400	Active TSS	Left Ventricle	heart
44	chr11:46366800-46368400	Enhancers	K562	blood
45	chr11:46366800-46368600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:46366800-46368800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:46366800-46368800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:46367000-46368200	Active TSS	Brain Substantia Nigra	brain
49	chr11:46367000-46368200	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr11:46367000-46368200	Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links