Variant report

Variant	rs6151925
Chromosome Location	chr5:80167329-80167330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80166800..80167382-chr5:80403557..80404427,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10040849	0.87[ASN][1000 genomes]
rs10075024	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346463	1.00[CHB][hapmap]
rs1346464	1.00[CHB][hapmap]
rs1650648	1.00[CHB][hapmap]
rs1677652	1.00[CHB][hapmap]
rs1677653	1.00[CHB][hapmap]
rs16878166	0.87[ASN][1000 genomes]
rs1805353	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28831684	1.00[ASN][1000 genomes]
rs56103733	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171552	0.83[EUR][1000 genomes]
rs6151665	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs6151838	0.87[ASN][1000 genomes]
rs6151900	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6151927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6151935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73125413	0.87[ASN][1000 genomes]
rs73125416	0.87[ASN][1000 genomes]
rs73127211	0.93[ASN][1000 genomes]
rs73137538	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73139506	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73139515	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs836801	1.00[CHB][hapmap]
rs836802	1.00[CHB][hapmap]
rs836806	1.00[CHB][hapmap]
rs836813	1.00[CHB][hapmap]
rs863214	1.00[CHB][hapmap]
rs964584	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv882231	chr5:79984714-80187929	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv598747	chr5:79996632-80322712	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016100	chr5:80023679-80254194	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1021784	chr5:80023679-80313586	ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv537787	chr5:80023679-80313586	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80042800-80173400	Weak transcription	Right Ventricle	heart
2	chr5:80087800-80167400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:80091400-80181000	Weak transcription	Small Intestine	intestine
4	chr5:80141200-80178800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:80143000-80175400	Weak transcription	HMEC	breast
6	chr5:80145600-80172800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:80145600-80175600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:80145600-80181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:80145800-80167400	Weak transcription	Placenta	Placenta
10	chr5:80145800-80173400	Weak transcription	Colonic Mucosa	Colon
11	chr5:80146000-80173400	Weak transcription	Esophagus	oesophagus
12	chr5:80146400-80170600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:80146400-80173400	Weak transcription	Brain Substantia Nigra	brain
14	chr5:80148400-80167400	Weak transcription	HSMM	muscle
15	chr5:80148600-80175600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:80148800-80173200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:80149200-80176200	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:80149800-80180000	Weak transcription	Psoas Muscle	Psoas
19	chr5:80151200-80173000	Weak transcription	Fetal Brain Male	brain
20	chr5:80151600-80175600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:80152000-80170800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:80152000-80171000	Weak transcription	Lung	lung
23	chr5:80152000-80173400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:80152000-80173400	Weak transcription	Pancreas	Pancrea
25	chr5:80152000-80173400	Weak transcription	Thymus	Thymus
26	chr5:80152200-80170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:80152800-80173200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:80152800-80179000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:80153000-80167400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:80153000-80168000	Weak transcription	Fetal Lung	lung
31	chr5:80153000-80168800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:80153000-80168800	Weak transcription	Fetal Thymus	thymus
33	chr5:80153400-80173400	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:80154000-80173600	Weak transcription	Fetal Brain Female	brain
35	chr5:80155600-80171400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:80157000-80173400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:80157200-80172800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:80157200-80173800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr5:80157400-80169400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:80157600-80167600	Weak transcription	NH-A	brain
41	chr5:80157600-80168000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:80157600-80173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:80157600-80173400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:80157600-80180000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr5:80157800-80171000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:80159800-80167600	Weak transcription	Spleen	Spleen
47	chr5:80160400-80167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:80161000-80167600	Weak transcription	Right Atrium	heart
49	chr5:80161000-80171000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:80162000-80169000	Weak transcription	Primary hematopoietic stem cells	blood

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