Variant report

Variant	rs61531655
Chromosome Location	chr7:137087961-137087962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs320717	1.00[AMR][1000 genomes]
rs56820348	1.00[AMR][1000 genomes]
rs61018676	1.00[AMR][1000 genomes]
rs73728685	1.00[AMR][1000 genomes]
rs73728687	1.00[AMR][1000 genomes]
rs73728688	1.00[AMR][1000 genomes]
rs73728690	1.00[AMR][1000 genomes]
rs73728699	1.00[AMR][1000 genomes]
rs73730319	1.00[AMR][1000 genomes]
rs73730606	1.00[AMR][1000 genomes]
rs73730607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137073800-137095600	Weak transcription	HSMMtube	muscle
2	chr7:137080600-137106000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:137081200-137090000	Weak transcription	Aorta	Aorta
4	chr7:137082200-137089600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:137084800-137090200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:137085200-137102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137085400-137089200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:137085400-137090000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:137085400-137091600	Weak transcription	HSMM	muscle
10	chr7:137085600-137089600	Weak transcription	Osteobl	bone
11	chr7:137085800-137089200	Weak transcription	NHDF-Ad	bronchial
12	chr7:137085800-137089600	Weak transcription	NH-A	brain
13	chr7:137086000-137102200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:137086000-137102400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137086600-137088400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:137086600-137088400	Enhancers	Fetal Brain Female	brain
17	chr7:137087000-137088400	Enhancers	Fetal Stomach	stomach
18	chr7:137087200-137088200	Enhancers	Brain Germinal Matrix	brain
19	chr7:137087200-137088400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr7:137087200-137088400	Enhancers	Fetal Muscle Leg	muscle
21	chr7:137087400-137088000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:137087400-137088200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr7:137087400-137088400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:137087400-137088400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:137087400-137088400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:137087400-137088400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr7:137087400-137088400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr7:137087400-137088400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:137087400-137088400	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr7:137087400-137088400	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr7:137087400-137088400	Enhancers	Fetal Brain Male	brain
32	chr7:137087400-137088600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:137087600-137088000	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr7:137087600-137088000	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:137087600-137088000	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr7:137087600-137088000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:137087600-137088000	Active TSS	Brain Angular Gyrus	brain
38	chr7:137087600-137088200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr7:137087600-137088200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr7:137087600-137088200	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr7:137087600-137088200	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr7:137087600-137088200	Active TSS	Brain Substantia Nigra	brain
43	chr7:137087600-137089600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr7:137087800-137088000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:137087800-137088400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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